Publications


2023


Viljakainen L, Fürst MA, Grasse AV, Jurvansuu J, Oh J, Tolonen L et al. Antiviral immune response reveals host-specific virus infections in natural ant populations. Frontiers in Microbiology. 2023 Mar 16;14:1119002. doi: 10.3389/fmicb.2023.1119002

Doulidis PG, Galler AI, Hausmann B, Berry D, Rodríguez-Rojas A, Burgener IA. Gut microbiome signatures of Yorkshire Terrier enteropathy during disease and remission. Scientific Reports. 2023 Mar 16;13(1):4337. doi: 10.1038/s41598-023-31024-w

Bourceau OM, Ferdelman T, Lavik G, Mussmann M, Kuypers MMM, Marchant HK. Simultaneous sulfate and nitrate reduction in coastal sediments. ISME Communications. 2023 Mar 8;3(1):17. doi: 10.1038/s43705-023-00222-y

Timmis K, Berry D, Bonfante P, Coleman M, Cunliffe M, Danchin A et al. Juan Luis Ramos: An exceptional Editor of Environmental Microbiology. Environmental Microbiology. 2023 Mar 1;25(3):595-596. Epub 2022 Dec 19. doi: 10.1111/1462-2920.16315

Zheng J, Fujii K, Koba K, Wanek W, Müller C, Jansen-Willems AB et al. Revisiting process-based simulations of soil nitrite dynamics: Tighter cycling between nitrite and nitrate than considered previously. Soil Biology and Biochemistry. 2023 Mar 1;178:108958. doi: 10.1016/j.soilbio.2023.108958

Schaap KJ, Fuchslueger L, Quesada CA, Hofhansl F, Valverde-Barrantes O, Camargo PB et al. Seasonal fluctuations of extracellular enzyme activities are related to the biogeochemical cycling of C, N and P in a tropical terra-firme forest. Biogeochemistry. 2023 Mar 1;163(1):1-15. Epub 2023 Jan 21. doi: 10.1007/s10533-022-01009-4

Bleeker EAJ, Swart E, Braakhuis H, Fernández Cruz ML, Friedrichs S, Gosens I et al. Towards harmonisation of testing of nanomaterials for EU regulatory requirements on chemical safety: A proposal for further actions. Regulatory toxicology and pharmacology : RTP. 2023 Mar 1;139:105360. Epub 2023 Feb 18. doi: 10.1016/j.yrtph.2023.105360

Osvatic JT, Yuen B, Kunert M, Wilkins L, Hausmann B, Girguis P et al. Gene loss and symbiont switching during adaptation to the deep sea in a globally distributed symbiosis. ISME Journal. 2023 Mar;17(3):453-466. Epub 2023 Jan 13. doi: 10.1038/s41396-022-01355-z

Hodzic A, Alic A. Hepatozoon silvestris: an emerging feline vector-borne pathogen in Europe? Trends in parasitology. 2023 Mar;39(3):163-166. Epub 2022 Dec 21. doi: 10.1016/j.pt.2022.12.001

Engelberts JP, Robbins SJ, Herbold CW, Moeller FU, Jehmlich N, Laffy PW et al. Metabolic reconstruction of the near complete microbiome of the model sponge Ianthella basta. Environmental Microbiology. 2023 Mar;25(3):646-660. Epub 2022 Dec 8. doi: 10.1111/1462-2920.16302

Picard MAL, Leblay F, Cassan C, Willemsen A, Daron J, Bauffe F et al. Transcriptomic, proteomic, and functional consequences of codon usage bias in human cells during heterologous gene expression. Protein Science. 2023 Mar;32(3):e4576. Epub 2023 Jan 24. doi: 10.1002/pro.4576


Elsherbini J, Corzett C, Ravaglioli C, Tamburello L, Polz M, Bulleri F. Epilithic Bacterial Assemblages on Subtidal Rocky Reefs: Variation Among Alternative Habitats at Ambient and Enhanced Nutrient Levels. Microbial Ecology. 2023 Feb 15;86(3):1552-1564. doi: 10.1007/s00248-023-02174-1

Heinzle J, Kitzler B, Zechmeister-Boltenstern S, Tian Y, Kengdo SK, Wanek W et al. Soil CH4 and N2O response diminishes during decadal soil warming in a temperate mountain forest. Agricultural and Forest Meteorology. 2023 Feb 15;329:109287. doi: 10.1016/j.agrformet.2022.109287

Ågerstrand M, Arinaitwe K, Backhaus T, Barra RO, Diamond ML, Grimalt JO et al. Key Principles for the Intergovernmental Science-Policy Panel on Chemicals and Waste. Environmental Science & Technology. 2023 Feb 14;57(6):2205-2208. Epub 2023 Jan 30. doi: 10.1021/acs.est.2c08283

Lüftinger L, Májek P, Rattei T, Beisken S. Metagenomic Antimicrobial Susceptibility Testing from Simulated Native Patient Samples. Antibiotics. 2023 Feb 9;12(2):366. doi: 10.3390/antibiotics12020366

Halter T, Köstlbacher S, Rattei T, Hendrickx F, Manzano-Marín A, Horn M. One to host them all: genomics of the diverse bacterial endosymbionts of the spider Oedothorax gibbosus. Microbial genomics. 2023 Feb 9;9(2):000943. doi: 10.1101/2022.05.31.494226, 10.1099/mgen.0.000943

Doncheva NT, Morris JH, Holze H, Kirsch R, Nastou KC, Cuesta-Astroz Y et al. Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks. Journal of Proteome Research. 2023 Feb 3;22(2):637-646. doi: 10.1021/acs.jproteome.2c00651