Publications

Showing entries 921 - 940 out of 960

2009

Tzahor S, Man-Aharonovich D, Kirkup BC, Yogev T, Berman-Frank I, Polz MF et al. A supervised learning approach for taxonomic classification of core-photosystem-II genes and transcripts in the marine environment. BMC Genomics. 2009 May 16;10:229. doi: 10.1186/1471-2164-10-229
Joss MJ, Koenig JE, Labbate M, Polz MF, Gillings MR, Stokes HW et al. Acid: annotation of cassette and integron data. BMC Bioinformatics. 2009 Apr 21;10:118. doi: 10.1186/1471-2105-10-118
Fraser C, Alm EJ, Polz MF, Spratt BG, Hanage WP. The bacterial species challenge: making sense of genetic and ecological diversity. Science (New York, N.Y.). 2009 Feb 6;323(5915):741-6. doi: 10.1126/science.1159388

2008

Stewart JR, Gast RJ, Fujioka RS, Solo-Gabriele HM, Meschke JS, Amaral-Zettler LA et al. The coastal environment and human health: microbial indicators, pathogens, sentinels and reservoirs. Environmental health : a global access science source. 2008 Nov 7;7 Suppl 2(Suppl 2):S3. doi: 10.1186/1476-069X-7-S2-S3
Hunt DE, David LA, Gevers D, Preheim SP, Alm EJ, Polz MF. Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science (New York, N.Y.). 2008 May 23;320(5879):1081-5. doi: 10.1126/science.1157890
Stocker R, Seymour JR, Samadani A, Hunt DE, Polz MF. Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches. Proceedings of the National Academy of Sciences of the United States of America. 2008 Mar 18;105(11):4209-14. doi: 10.1073/pnas.0709765105
Hunt DE, Gevers D, Vahora NM, Polz MF. Conservation of the chitin utilization pathway in the Vibrionaceae. Applied and Environmental Microbiology. 2008 Jan;74(1):44-51. doi: 10.1128/AEM.01412-07

2007

Sabehi G, Kirkup BC, Rozenberg M, Stambler N, Polz MF, Béjà O. Adaptation and spectral tuning in divergent marine proteorhodopsins from the eastern Mediterranean and the Sargasso Seas. The ISME Journal. 2007 May;1(1):48-55. doi: 10.1038/ismej.2007.10

2006

Polz MF, Hunt DE, Preheim SP, Weinreich DM. Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 2006 Nov 29;361(1475):2009-21. doi: 10.1098/rstb.2006.1928
Marcelino LA, Backman V, Donaldson A, Steadman C, Thompson JR, Preheim SP et al. Accurately quantifying low-abundant targets amid similar sequences by revealing hidden correlations in oligonucleotide microarray data. Proceedings of the National Academy of Sciences of the United States of America. 2006 Sept 12;103(37):13629-34. doi: 10.1073/pnas.0601476103
Ge Z, Feng Y, Taylor NS, Ohtani M, Polz MF, Schauer DB et al. Colonization dynamics of altered Schaedler flora is influenced by gender, aging, and Helicobacter hepaticus infection in the intestines of Swiss Webster mice. Applied and Environmental Microbiology. 2006 Jul;72(7):5100-3. doi: 10.1128/AEM.01934-05
Hunt DE, Klepac-Ceraj V, Acinas SG, Gautier C, Bertilsson S, Polz MF. Evaluation of 23S rRNA PCR primers for use in phylogenetic studies of bacterial diversity. Applied and Environmental Microbiology. 2006 Mar;72(3):2221-5. doi: 10.1128/AEM.72.3.2221-2225.2006
Luyten YA, Thompson JR, Morrill W, Polz MF, Distel DL. Extensive variation in intracellular symbiont community composition among members of a single population of the wood-boring bivalve Lyrodus pedicellatus (Bivalvia: Teredinidae). Applied and Environmental Microbiology. 2006 Jan;72(1):412-7. doi: 10.1128/AEM.72.1.412-417.2006

2005

Acinas SG, Sarma-Rupavtarm R, Klepac-Ceraj V, Polz MF. PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample. Applied and Environmental Microbiology. 2005 Dec;71(12):8966-9. doi: 10.1128/AEM.71.12.8966-8969.2005
Perry TD, Klepac-Ceraj V, Zhang XV, McNamara CJ, Polz MF, Martin ST et al. Binding of harvested bacterial exopolymers to the surface of calcite. Environmental Science & Technology. 2005 Nov 15;39(22):8770-5. doi: 10.1021/es0508368
Thompson JR, Pacocha S, Pharino C, Klepac-Ceraj V, Hunt DE, Benoit J et al. Genotypic diversity within a natural coastal bacterioplankton population. Science (New York, N.Y.). 2005 Feb 25;307(5713):1311-3. doi: 10.1126/science.1106028

2004

Randa MA, Polz MF, Lim E. Effects of temperature and salinity on Vibrio vulnificus population dynamics as assessed by quantitative PCR. Applied and Environmental Microbiology. 2004 Sept;70(9):5469-76. doi: 10.1128/AEM.70.9.5469-5476.2004
Acinas SG, Klepac-Ceraj V, Hunt DE, Pharino C, Ceraj I, Distel DL et al. Fine-scale phylogenetic architecture of a complex bacterial community. Nature. 2004 Jul 29;430(6999):551-4. doi: 10.1038/nature02649
Thompson JR, Randa MA, Marcelino LA, Tomita-Mitchell A, Lim E, Polz MF. Diversity and dynamics of a north atlantic coastal Vibrio community. Applied and Environmental Microbiology. 2004 Jul;70(7):4103-10. doi: 10.1128/AEM.70.7.4103-4110.2004
Klepac-Ceraj V, Bahr M, Crump BC, Teske AP, Hobbie JE, Polz MF. High overall diversity and dominance of microdiverse relationships in salt marsh sulphate-reducing bacteria. Environmental Microbiology. 2004 Jul;6(7):686-98. doi: 10.1111/j.1462-2920.2004.00600.x
Showing entries 921 - 940 out of 960