The COVID-19 pandemic poses an enormous threat for healthcare systems and economies in Austria, Europe and the world. In this time of crisis, scientists in Vienna are responding to the threat. 20 research institutions have joined forces to form the Vienna COVID-19 Diagnostics Initiative (VCDI). This initiative is now putting a new diagnostics pipeline into operation. The VCDI is also developing a range of high-throughput tests to better understand and combat the virus. Many DOMIES as well as the Joint Microbiome Facility are involved in this initiative and are excited to contribute to this joint effort.